8.1 Carbon's Bonding, Structural Formulae and Classification
Carbon forms four bonds, links to itself in chains and rings, and makes single, double and triple bonds. This section shows how hybridisation fixes the shapes of organic molecules, how chemists write their structures — complete, condensed, bond-line and wedge–dash — and how millions of compounds are sorted into families by skeleton and functional group.
Until 1828 most chemists believed that the substances made by living things — sugar, urea, fats, dyes — could only be made by living things, because they needed a mysterious "vital force". In that year Friedrich Wöhler warmed ammonium cyanate, a salt made from minerals, and obtained urea, a compound until then isolated only from urine. Hermann Kolbe made acetic acid from its elements in 1845 and Marcellin Berthelot made methane in 1856. The vital force was dead; organic chemistry became the chemistry of carbon compounds, and today tens of millions of them are known — far more than the compounds of all the other elements put together.
Why carbon? A carbon atom forms four strong covalent bonds, it bonds to other carbon atoms to build chains and rings of almost any length, and it forms stable multiple bonds with carbon, oxygen and nitrogen. Before we can name organic compounds or follow their reactions, we need three tools: the link between hybridisation and shape (which you met in Section 4.3), a quick way to draw structures, and a system for sorting compounds into families.
Tetravalence of Carbon and the Shapes of Organic Molecules
Catenation is the ability of atoms of an element to bond to one another to form long chains and rings. Carbon shows it to a far greater extent than any other element, because the $\mathrm{C{-}C}$ bond is short and strong (bond enthalpy about $348\ \mathrm{kJ\,mol^{-1}}$).
Carbon ($1s^{2}2s^{2}2p^{2}$) is tetravalent: it shares its four valence electrons in four covalent bonds. In valence bond language (Section 4.3) the carbon atom mixes its $2s$ orbital with one, two or all three of its $2p$ orbitals. The hybrid orbitals form σ bonds; any $2p$ orbitals left over overlap sideways to form π bonds. So the type of hybridisation can be read straight off the bonds a carbon atom makes.
- 4 σ bonds (only single bonds): $sp^{3}$, tetrahedral, bond angles $109.5^{\circ}$ — e.g. every carbon of $\mathrm{CH_{4}}$, $\mathrm{CH_{3}CH_{3}}$.
- 3 σ bonds + 1 π bond (one double bond): $sp^{2}$, trigonal planar, $120^{\circ}$ — e.g. $\mathrm{CH_{2}{=}CH_{2}}$, the carbonyl carbon of $\mathrm{HCHO}$.
- 2 σ bonds + 2 π bonds (a triple bond, or two double bonds): $sp$, linear, $180^{\circ}$ — e.g. $\mathrm{HC{\equiv}CH}$, the central carbon of $\mathrm{CH_{2}{=}C{=}CH_{2}}$.
| Hybridisation | Example | Shape round C | Bond angle | $s$ character | $\mathrm{C{-}C}$ bond length |
|---|---|---|---|---|---|
| $sp^{3}$ | ethane, $\mathrm{C{-}C}$ | tetrahedral | $109.5^{\circ}$ | $25\%$ | $154\ \mathrm{pm}$ |
| $sp^{2}$ | ethene, $\mathrm{C{=}C}$ | trigonal planar | $120^{\circ}$ | $33\%$ | $134\ \mathrm{pm}$ |
| $sp$ | ethyne, $\mathrm{C{\equiv}C}$ | linear | $180^{\circ}$ | $50\%$ | $120\ \mathrm{pm}$ |
The π bond has two important consequences. Sideways overlap works only while the two $p$ orbitals stay parallel, so the groups on a double bond cannot rotate freely about it (the origin of geometrical isomerism in Section 8.2), and the atoms of $\mathrm{C{=}C}$ and the four atoms attached to them all lie in one plane. And because the π electrons sit above and below the bond axis, away from the nuclei, they are easily reached by electron-seeking reagents: a multiple bond is a reactive centre of an organic molecule.
Representing Organic Molecules: Structural Formulae
A molecular formula such as $\mathrm{C_{3}H_{8}O}$ says which atoms are present but not how they are joined — and three different compounds share that formula (Section 8.2). Organic chemists therefore write structural formulae, at several levels of detail.
- Complete (expanded) structural formula — every atom and every bond is shown; a dash is a shared pair, $=$ a double and $\equiv$ a triple bond. Lone pairs may be added (a Lewis structure).
- Condensed structural formula — the bonds to hydrogen, and often the $\mathrm{C{-}C}$ bonds, are left out and the atoms on each carbon are grouped: $\mathrm{CH_{3}CH_{2}CH_{2}OH}$. Identical groups in a row are bracketed with a subscript: $\mathrm{CH_{3}(CH_{2})_{4}CH_{3}}$; identical groups on one atom too: $\mathrm{(CH_{3})_{3}CH}$.
- Bond-line (skeletal) formula — carbon chains are drawn as zig-zag lines. Every line end and every vertex is a carbon atom; hydrogen atoms on carbon are not shown (each carbon carries enough H to make four bonds); all other atoms, and the hydrogens attached to them, are written in.
- Three-dimensional (wedge–dash) formula — bonds in the plane of the paper are plain lines, a solid wedge points towards the viewer and a hashed wedge points away.
- Put a carbon atom at every line end and every vertex (unless another atom is written there).
- For each carbon, add up its bonds (a double line counts 2, a triple line 3). Its number of hydrogens is $4-(\text{bonds drawn})$.
- Copy the hetero atoms ($\mathrm{O}$, $\mathrm{N}$, halogens) and the hydrogens written on them.
- Count atoms for the molecular formula; then check that every carbon has four bonds, every oxygen two and every nitrogen three.
Not named in the CBSE, JEE Main, NEET or JEE Advanced syllabus, but it is a quick check used in structure and isomer problems in all three entrance exams.
For a compound $\mathrm{C}_{c}\mathrm{H}_{h}\mathrm{N}_{n}\mathrm{X}_{x}\mathrm{O}_{o}$ ($\mathrm{X}$ = halogen) the degree of unsaturation (double-bond equivalent) is $$\text{DU}=c-\tfrac{h}{2}-\tfrac{x}{2}+\tfrac{n}{2}+1$$ Oxygen and sulphur do not appear. Each ring or double bond counts 1, each triple bond 2. Examples: $\mathrm{C_{6}H_{6}}$: $6-3+1=4$ (one ring + three $\mathrm{C{=}C}$); $\mathrm{C_{6}H_{10}}$: $2$; $\mathrm{C_{2}H_{3}N}$ ($\mathrm{CH_{3}CN}$): $2-1.5+0.5+1=2$ (one $\mathrm{C{\equiv}N}$). JEE and NEET use it to rule out structures before naming them.Classification of Organic Compounds
With so many compounds known, chemists sort them twice: once by the shape of the carbon skeleton, and once by the reactive group that the skeleton carries.
- Acyclic (open-chain or aliphatic) compounds contain straight or branched chains of atoms, but no ring: $\mathrm{CH_{3}CH_{2}CH_{3}}$, $\mathrm{(CH_{3})_{2}CHCH_{2}OH}$.
- Cyclic (closed-chain) compounds contain one or more rings:
- Alicyclic compounds have rings of carbon atoms that behave like aliphatic compounds: cyclopropane, cyclohexane, cyclohexene. A ring of carbon atoms only is called homocyclic.
- Aromatic compounds are a special class of planar, unsaturated rings with exceptional stability (Chapter 9). Benzenoid aromatic compounds contain one or more benzene rings — benzene, methylbenzene (toluene), naphthalene; non-benzenoid aromatic compounds such as tropolone do not.
- Heterocyclic compounds have at least one atom other than carbon (N, O or S) in the ring. They may be aromatic — pyridine, furan, thiophene — or alicyclic, such as tetrahydrofuran.
A homologous series is a family of compounds with the same functional group in which each member differs from the next by a $\mathrm{{-}CH_{2}{-}}$ unit. The members are called homologues.
| Class | Functional group | General formula | Example (IUPAC name, common name) |
|---|---|---|---|
| alkane | — (only $\mathrm{C{-}C}$, $\mathrm{C{-}H}$) | $\mathrm{C}_{n}\mathrm{H}_{2n+2}$ | $\mathrm{CH_{3}CH_{3}}$ ethane |
| alkene | $\mathrm{C{=}C}$ | $\mathrm{C}_{n}\mathrm{H}_{2n}$ | $\mathrm{CH_{2}{=}CH_{2}}$ ethene (ethylene) |
| alkyne | $\mathrm{C{\equiv}C}$ | $\mathrm{C}_{n}\mathrm{H}_{2n-2}$ | $\mathrm{HC{\equiv}CH}$ ethyne (acetylene) |
| haloalkane | $\mathrm{{-}X}$ (F, Cl, Br, I) | $\mathrm{C}_{n}\mathrm{H}_{2n+1}\mathrm{X}$ | $\mathrm{CH_{3}CH_{2}Cl}$ chloroethane |
| alcohol | $\mathrm{{-}OH}$ | $\mathrm{C}_{n}\mathrm{H}_{2n+1}\mathrm{OH}$ | $\mathrm{CH_{3}CH_{2}OH}$ ethanol |
| ether | $\mathrm{{-}O{-}}$ | $\mathrm{R{-}O{-}R'}$ | $\mathrm{CH_{3}OCH_{3}}$ methoxymethane (dimethyl ether) |
| aldehyde | $\mathrm{{-}CHO}$ | $\mathrm{C}_{n}\mathrm{H}_{2n}\mathrm{O}$ | $\mathrm{CH_{3}CHO}$ ethanal (acetaldehyde) |
| ketone | $\mathrm{\gt C{=}O}$ | $\mathrm{C}_{n}\mathrm{H}_{2n}\mathrm{O}$ | $\mathrm{CH_{3}COCH_{3}}$ propanone (acetone) |
| carboxylic acid | $\mathrm{{-}COOH}$ | $\mathrm{C}_{n}\mathrm{H}_{2n}\mathrm{O_{2}}$ | $\mathrm{CH_{3}COOH}$ ethanoic acid (acetic acid) |
| ester | $\mathrm{{-}COOR}$ | $\mathrm{C}_{n}\mathrm{H}_{2n}\mathrm{O_{2}}$ | $\mathrm{CH_{3}COOCH_{3}}$ methyl ethanoate |
| acid chloride | $\mathrm{{-}COCl}$ | — | $\mathrm{CH_{3}COCl}$ ethanoyl chloride |
| amide | $\mathrm{{-}CONH_{2}}$ | — | $\mathrm{CH_{3}CONH_{2}}$ ethanamide |
| amine | $\mathrm{{-}NH_{2}}$ | $\mathrm{C}_{n}\mathrm{H}_{2n+3}\mathrm{N}$ | $\mathrm{CH_{3}NH_{2}}$ methanamine (methylamine) |
| nitrile | $\mathrm{{-}C{\equiv}N}$ | — | $\mathrm{CH_{3}CN}$ ethanenitrile (acetonitrile) |
| nitro compound | $\mathrm{{-}NO_{2}}$ | — | $\mathrm{CH_{3}NO_{2}}$ nitromethane |
- All members can be represented by one general formula (alkanes $\mathrm{C}_{n}\mathrm{H}_{2n+2}$, alkanols $\mathrm{C}_{n}\mathrm{H}_{2n+1}\mathrm{OH}$, …).
- Successive members differ by $\mathrm{CH_{2}}$, i.e. by $14\ \mathrm{u}$ in molecular mass.
- All members contain the same functional group and have similar chemical properties.
- Physical properties change gradually along the series: boiling point and density rise with molar mass, solubility in water falls as the hydrocarbon part grows.
- Members can usually be prepared by the same general methods.
Exercises
- 1 In its ground state carbon has only two unpaired electrons. Explain how it forms four bonds of equal strength in methane.
- 2 Give the hybridisation of each carbon (from the left) in but-2-enal, $\mathrm{CH_{3}{-}CH{=}CH{-}CHO}$.
- 3 Give the hybridisation of each carbon (from the left) in $\mathrm{HC{\equiv}C{-}CH_{2}{-}CH{=}CH_{2}}$.
- 4 Count the σ and π bonds in but-2-yne, $\mathrm{CH_{3}{-}C{\equiv}C{-}CH_{3}}$.
- 5 Count the σ and π bonds in buta-1,2-diene, $\mathrm{CH_{2}{=}C{=}CH{-}CH_{3}}$.
- 6 Count the σ and π bonds in cyclohexa-1,3-diene, $\mathrm{C_{6}H_{8}}$ (a six-membered ring with two double bonds).
- 7 Arrange the carbon–carbon bonds of ethane, ethene, ethyne and benzene in order of increasing length.
- 8 Why is a $\mathrm{C{-}H}$ bond to an $sp$ carbon shorter than a $\mathrm{C{-}H}$ bond to an $sp^{3}$ carbon?
- 1 How many $\mathrm{C{-}H}$ bonds are drawn in the complete structural formula of $\mathrm{CH_{3}CH(CH_{3})CH_{2}CH_{3}}$?
- 2 A chain of six carbon atoms carries an $\mathrm{OH}$ group on the second carbon. Write its condensed and molecular formulae.
- 3 Write the molecular formula of $\mathrm{(CH_{3})_{2}CHCH_{2}CH(CH_{3})_{2}}$.
- 4 Find the molecular formula and molar mass of $\mathrm{CH_{3}COCH_{2}CH_{2}COOH}$ ($\mathrm{C}=12$, $\mathrm{H}=1$, $\mathrm{O}=16$).
- 5 A bond-line formula is a zig-zag of four lines (five carbons) with a double line between the second and third carbons. Write its condensed and molecular formulae.
- 6 A bond-line formula shows a hexagon of single lines with one corner joined to $\mathrm{OH}$. Write its molecular formula.
- 7 A bond-line formula shows a benzene ring with one extra line from a corner (no label at its end). Name the compound and give its molecular formula.
- 8 In a wedge–dash drawing of $\mathrm{CH_{2}BrCl}$, Br and Cl are on plain lines, one H on a wedge and one on a hashed wedge. Which atoms lie in the plane of the paper?
- 1 Classify by skeleton: cyclopentane, thiophene, methylbenzene, $\mathrm{CH_{3}CH_{2}OCH_{2}CH_{3}}$.
- 2 Name the functional groups in $\mathrm{CH_{2}{=}CHCOOH}$.
- 3 Name the functional groups in $\mathrm{HOCH_{2}CH_{2}NH_{2}}$.
- 4 Which of $\mathrm{CH_{3}OH}$, $\mathrm{C_{2}H_{5}OH}$, $\mathrm{CH_{3}OCH_{3}}$, $\mathrm{C_{3}H_{7}OH}$ and $\mathrm{CH_{3}CHO}$ belong to one homologous series?
- 5 Write the condensed formula and molar mass of the third member of the aldehyde series (methanal is the first).
- 6 Give the general formula of the alkanoic acids and the molecular formula of the member with $M=102\ \mathrm{g\,mol^{-1}}$.
- 7 Write the next higher homologue of $\mathrm{C_{4}H_{9}NH_{2}}$ and its molar mass ($\mathrm{N}=14$).
- 8 Ethanol and propan-1-ol react in almost the same way, but boil at $78\ ^{\circ}\mathrm{C}$ and $97\ ^{\circ}\mathrm{C}$. Explain both facts.
- 1 Applied. Paracetamol is $\mathrm{HO{-}C_{6}H_{4}{-}NHCOCH_{3}}$. Name its functional groups and find its molar mass ($\mathrm{C}=12$, $\mathrm{H}=1$, $\mathrm{N}=14$, $\mathrm{O}=16$).
- 2 Applied. Aspirin is $\mathrm{CH_{3}COO{-}C_{6}H_{4}{-}COOH}$. Name its functional groups, and find its molecular formula and molar mass.
- 3 Benzene ($\mathrm{C_{6}H_{6}}$) is flat but cyclohexane ($\mathrm{C_{6}H_{12}}$) is not. Explain using hybridisation.
- 4 How many $sp^{3}$, $sp^{2}$ and $sp$ carbons are there in but-2-enenitrile, $\mathrm{CH_{3}{-}CH{=}CH{-}C{\equiv}N}$?
- 5 Count the σ and π bonds in but-2-enenitrile.
- 6 Why can the two ends of ethane rotate freely about the $\mathrm{C{-}C}$ bond, while the two ends of ethene cannot?
- 7 When ethene is polymerised to polythene, $n\,\mathrm{CH_{2}{=}CH_{2}}\rightarrow\mathrm{({-}CH_{2}{-}CH_{2}{-})}_{n}$, how does the hybridisation of carbon change?
- 8 In which of ethene, ethane, benzene and propene do all the atoms lie in one plane?
E1. NEET The hybridisations of the three carbon atoms (in order) in $\mathrm{CH_{2}{=}C{=}CH_{2}}$ are (A) $sp^{2}, sp^{2}, sp^{2}$ (B) $sp^{2}, sp, sp^{2}$ (C) $sp, sp^{2}, sp$ (D) $sp^{3}, sp, sp^{3}$
E2. JEE Main Numerical answer. How many σ bonds are there in hexa-1,3-dien-5-yne, $\mathrm{CH_{2}{=}CH{-}CH{=}CH{-}C{\equiv}CH}$?
E3. Board · 3 marks What is a homologous series? State two of its characteristics, and write the condensed formula of the next homologue of $\mathrm{CH_{3}CH_{2}CHO}$.
E4. JEE Main In which compound are all the carbon atoms $sp^{2}$ hybridised? (A) $\mathrm{CH_{2}{=}CH{-}CH_{3}}$ (B) $\mathrm{CH_{2}{=}CH{-}CH{=}CH_{2}}$ (C) $\mathrm{HC{\equiv}C{-}CH{=}CH_{2}}$ (D) $\mathrm{CH_{2}{=}C{=}CH_{2}}$
E5. NEET Which pair consists of members of the same homologous series? (A) $\mathrm{C_{2}H_{5}OH}$ and $\mathrm{CH_{3}OCH_{3}}$ (B) $\mathrm{CH_{3}CHO}$ and $\mathrm{CH_{3}COCH_{3}}$ (C) $\mathrm{C_{2}H_{6}}$ and $\mathrm{C_{3}H_{8}}$ (D) $\mathrm{C_{2}H_{4}}$ and $\mathrm{C_{2}H_{2}}$
E6. Board · Case study But-3-en-2-one, $\mathrm{CH_{2}{=}CH{-}CO{-}CH_{3}}$, is an industrial building block for plastics and vitamins. (i) Give the hybridisation of each carbon (from the left) and the shape around the third carbon. (2 marks) (ii) Count the σ and π bonds. (1 mark) (iii) Name its two functional groups and give its molecular formula. (1 mark)
Research question. Pharmaceutical companies screen millions of candidate molecules every year. Before spending money on a compound, chemists check simple numbers that can be read straight off its structural formula. Which numbers, and do familiar medicines pass the test?
Why it matters. In 1997 Christopher Lipinski at Pfizer noticed that most medicines taken by mouth obey a "rule of five": molar mass at most $500\ \mathrm{g\,mol^{-1}}$, at most 5 hydrogen-bond donors ($\mathrm{O{-}H}$ and $\mathrm{N{-}H}$ groups), at most 10 hydrogen-bond acceptors (counted simply as N and O atoms) and a limited preference for oil over water. Drug-discovery teams in Europe, the USA, India and China still use such filters to decide which molecules to make first — and they are applied to structural formulae just like the ones in this section.
What to do.
- Look up the condensed or bond-line formulae of paracetamol, aspirin, ibuprofen and caffeine (any reliable chemistry database). Classify each by skeleton and list its functional groups.
- Work out the molecular formula and molar mass of each ($\mathrm{C}=12$, $\mathrm{H}=1$, $\mathrm{N}=14$, $\mathrm{O}=16$).
- Count the hydrogen-bond donors and acceptors of each.
- Decide whether each passes Lipinski's limits on mass, donors and acceptors. Which functional groups contribute most to the donor and acceptor counts?
Tools: Definitions 8.2–8.4, the functional-group table, Interactive 1 (for checking your atom counts on smaller fragments) and a chemistry database.
Hand in: A table (compound, formula, $M$, functional groups, donors, acceptors, pass/fail) and a paragraph on how one structural change — say, replacing $\mathrm{{-}COOH}$ by $\mathrm{{-}COOCH_{3}}$ — would change the counts.
Going further. Find a medicine that breaks the rule of five but still works (many antibiotics do). How does it reach its target?
🧪 Self-check quiz
Q1. The hybridisation of the carbonyl carbon in propanone, $\mathrm{CH_{3}COCH_{3}}$, is
Q2. Ethyne, $\mathrm{HC{\equiv}CH}$, contains
Q3. Which is a heterocyclic aromatic compound?
Q4. Successive members of a homologous series differ in molar mass by
Q5. In a bond-line formula, a vertex where three single lines meet stands for